OpenText Analytics Database 26.2.x – TensorFlow models

Data-Analysis: TensorFlow integration and directory structure

Mon, 01 Jan 0001 00:00:00 +0000

This page covers importing Tensorflow models into OpenText™ Analytics Database, making predictions on data in the database, and exporting the model for use on another database cluster or a third-party platform.

For a start-to-finish example through each operation, see TensorFlow example.

OpenText™ Analytics Database supports models created with either TensorFlow 1.x and 2.x, but 2.x is strongly recommended.

To use TensorFlow, install the TFIntegration UDX package on any node. You only need to do this once:

$ /opt/vertica/bin/admintools -t install_package -d database_name -p 'password' --package TFIntegration

Directory and file structure for TensorFlow models

Before importing your models, you should have a separate directory for each model that contains each of the following files. Note that the database uses the directory name as the model name when you import it:

model_name.pb: a trained model in frozen graph format
tf_model_desc.json: a description of the model

For example, a tf_models directory that contains two models, tf_mnist_estimator and tf_mnist_keras, has the following layout:

tf_models/
├── tf_mnist_estimator
│   ├── mnist_estimator.pb
│   └── tf_model_desc.json
└── tf_mnist_keras
    ├── mnist_keras.pb
    └── tf_model_desc.json

You can generate both of these files for a given TensorFlow 2 (TF2) model with the freeze_tf2_model.py script included in the Machine-Learning-Examples GitHub repository and in the opt/vertica/packages/TFIntegration/examples directory in the database. The script accepts three arguments:

model-path: Path to a saved TF2 model directory.
folder-name: (Optional) Name of the folder to which the frozen model is saved; by default, frozen_tfmodel.
column-type: (Optional) Integer, either 0 or 1, that signifies whether the input and output columns for the model are primitive or complex types. Use a value of 0 (default) for primitive types, or 1 for complex.

For example, the following call outputs the frozen tf_autoencoder model, which accepts complex input/output columns, into the frozen_autoencoder folder:

$ python3 ./freeze_tf2_model.py path/to/tf_autoencoder frozen_autoencoder 1

tf_model_desc.json

The tf_model_desc.json file forms the bridge between TensorFlow and the database. It describes the structure of the model so that the database can correctly match up its inputs and outputs to input/output tables.

Notice that the freeze_tf2_model.py script automatically generates this file for your TensorFlow 2 model, and this generated file can often be used as-is. For more complex models or use cases, you might have to edit this file. For a detailed breakdown of each field, see tf_model_desc.json overview.

Importing TensorFlow models

To import TensorFlow models, use IMPORT_MODELS with the category 'TENSORFLOW'.

Import a single model. Keep in mind that the database uses the directory name as the model name:

select IMPORT_MODELS ( '/path/tf_models/tf_mnist_keras' USING PARAMETERS category='TENSORFLOW');
 import_models
---------------
 Success
(1 row)

Import all models in the directory (where each model has its own directory) with a wildcard (*):

select IMPORT_MODELS ('/path/tf_models/*' USING PARAMETERS category='TENSORFLOW');
 import_models
---------------
 Success
(1 row)

Make predictions with an imported TensorFlow model

After importing your TensorFlow model, you can use the model to predict on data in a database table. OpenText™ Analytics Database provides two functions for making predictions with imported TensorFlow models: PREDICT_TENSORFLOW and PREDICT_TENSORFLOW_SCALAR.

The function you choose depends on whether you specified a column-type of 0 or 1 when calling the freeze_tf2_model.py script. If column-type was 0, meaning the model accepts primitive input and output types, use PREDICT_TENSORFLOW to make predictions; otherwise, use PREDICT_TENSORFLOW_SCALAR, as your model should accept complex input and output types.

Using PREDICT_TENSORFLOW

The PREDICT_TENSORFLOW function is different from the other predict functions in that it does not accept any parameters that affect the input columns such as "exclude_columns" or "id_column"; rather, the function always predicts on all the input columns provided. However, it does accept a num_passthru_cols parameter which allows the user to "skip" some number of input columns, as shown below.

The OVER(PARTITION BEST) clause tells the database to parallelize the operation across multiple nodes. See Window partition clause for details:

=> select PREDICT_TENSORFLOW (*
                   USING PARAMETERS model_name='tf_mnist_keras', num_passthru_cols=1)
                   OVER(PARTITION BEST) FROM tf_mnist_test_images;

--example output, the skipped columns are displayed as the first columns of the output
 ID | col0 | col1 | col2 | col3 | col4 | col5 | col6 | col7 | col8 | col9
----+------+------+------+------+------+------+------+------+------+------
  1 |    0 |    0 |    1 |    0 |    0 |    0 |    0 |    0 |    0 |    0
  3 |    1 |    0 |    0 |    0 |    0 |    0 |    0 |    0 |    0 |    0
  6 |    0 |    0 |    0 |    0 |    1 |    0 |    0 |    0 |    0 |    0
...

Using PREDICT_TENSORFLOW_SCALAR

The PREDICT_TENSORFLOW_SCALAR function accepts one input column of type ROW, where each field corresponds to an input tensor. It returns one output column of type ROW, where each field corresponds to an output tensor. This complex type support can simplify the process for making predictions on data with many input features.

For instance, the MNIST handwritten digit classification dataset contains 784 input features for each input row, one feature for each pixel in the images of handwritten digits. The PREDICT_TENSORFLOW function requires that each of these input features are contained in a separate input column. By encapsulating these features into a single ARRAY, the PREDICT_TENSORFLOW_SCALAR function only needs a single input column of type ROW, where the pixel values are the array elements for an input field:

--Each array for the "image" field has 784 elements. 
=> SELECT * FROM mnist_train;
id |                   inputs
---+---------------------------------------------
 1 | {"image":[0, 0, 0,..., 244, 222, 210,...]}
 2 | {"image":[0, 0, 0,..., 185, 84, 223,...]}
 3 | {"image":[0, 0, 0,..., 133, 254, 78,...]}
 ...

In this case, the function output consists of a single opeartion with one tensor. The value of this field is an array of ten elements, which are all zero except for the element whose index is the predicted digit:

=> SELECT id, PREDICT_TENSORFLOW_SCALAR(inputs USING PARAMETERS model_name='tf_mnist_ct') FROM mnist_test;
 id |                   PREDICT_TENSORFLOW_SCALAR                      
----+-------------------------------------------------------------------
  1 | {"prediction:0":["0", "0", "0", "0", "1", "0", "0", "0", "0", "0"]} 
  2 | {"prediction:0":["0", "1", "0", "0", "0", "0", "0", "0", "0", "0"]} 
  3 | {"prediction:0":["0", "0", "0", "0", "0", "0", "0", "1", "0", "0"]} 
...

Exporting TensorFlow models

The database exports the model as a frozen graph, which can then be re-imported at any time. Keep in mind that models that are saved as a frozen graph cannot be trained further.

Use EXPORT_MODELS to export TensorFlow models. For example, to export the tf_mnist_keras model to the /path/to/export/to directory:

=> SELECT EXPORT_MODELS ('/path/to/export/to', 'tf_mnist_keras');
 export_models
---------------
 Success
(1 row)

When you export a TensorFlow model, the database creates and uses the specified directory to store files that describe the model:

$ ls tf_mnist_keras/
crc.json  metadata.json  mnist_keras.pb  model.json  tf_model_desc.json

The .pb and tf_model_desc.json files describe the model, and the rest are organizational files created by the database.

File Name	Purpose
`model_name.pb`	Frozen graph of the model.
`tf_model_desc.json`	Describes the model.
`crc.json`	Keeps track of files in this directory and their sizes. It is used for importing models.
`metadata.json`	Contains database version, model type, and other information.
`model.json`	More verbose version of `tf_model_desc.json`.

Data-Analysis: TensorFlow example

Mon, 01 Jan 0001 00:00:00 +0000

OpenText™ Analytics Database uses the TFIntegration UDX package to integrate with TensorFlow. You can train your models outside of your database, then import them and make predictions on your data.

TensorFlow scripts and datasets are included in the GitHub repository under Machine-Learning-Examples/TensorFlow.

The example below creates a Keras (a TensorFlow API) neural network model trained on the MNIST handwritten digit classification dataset, the layers of which are shown below.

The data is fed through each layer from top to bottom, and each layer modifies the input before returning a score. In this example, the data passed in is a set of images of handwritten Arabic numerals and the output would be the probability of the input image being a particular digit:

inputs = keras.Input(shape=(28, 28, 1), name="image")
x = layers.Conv2D(32, 5, activation="relu")(inputs)
x = layers.MaxPooling2D(2)(x)
x = layers.Conv2D(64, 5, activation="relu")(x)
x = layers.MaxPooling2D(2)(x)
x = layers.Flatten()(x)
x = layers.Dense(10, activation='softmax', name='OUTPUT')(x)
tfmodel = keras.Model(inputs, x)

For more information on how TensorFlow interacts with your database and how to import more complex models, see TensorFlow integration and directory structure.

Prepare a TensorFlow model

The following procedures take place outside of the database.

Train and save a TensorFlow model

Install TensorFlow 2.
Train your model. For this particular example, you can run train_simple_model.py to train and save the model. Otherwise, and more generally, you can manually train your model in Python and then save it:
```
$ mymodel.save('my_saved_model_dir')
```
Run the freeze_tf2_model.py script included in the Machine-Learning-Examples repository or in opt/vertica/packages/TFIntegration/examples, specifying your model, an output directory (optional, defaults to frozen_tfmodel), and the input and output column type (0 for primitive, 1 for complex).

This script transforms your saved model into a compatible frozen graph format and creates the tf_model_desc.json file, which describes how the database should translate its tables to TensorFlow tensors:
```
$ ./freeze_tf2_model.py path/to/tf/model frozen_model_dir 0
```

Import TensorFlow models and make predictions

If you haven't already, as dbadmin, install the TFIntegration UDX package on any node. You only need to do this once.
```
$ /opt/vertica/bin/admintools -t install_package -d database_name -p 'password' --package TFIntegration
```

Copy the directory to any node in your database cluster and import the model:

=> SELECT IMPORT_MODELS('path/to/frozen_model_dir' USING PARAMETERS category='TENSORFLOW');

Import the dataset you want to make a prediction on. For this example:
1. Copy the Machine-Learning-Examples/TensorFlow/data directory to any node on your database cluster.
2. From that data directory, run the SQL script load_tf_data.sql to load the MNIST dataset:
```
$ vsql -f load_tf_data.sql
```

Make a prediction with your model on your dataset with PREDICT_TENSORFLOW. In this example, the model is used to classify the images of handwritten numbers in the MNIST dataset:

=> SELECT PREDICT_TENSORFLOW (*
                   USING PARAMETERS model_name='tf_mnist_keras', num_passthru_cols=1)
                   OVER(PARTITION BEST) FROM tf_mnist_test_images;

--example output, the skipped columns are displayed as the first columns of the output
 ID | col0 | col1 | col2 | col3 | col4 | col5 | col6 | col7 | col8 | col9
----+------+------+------+------+------+------+------+------+------+------
  1 |    0 |    0 |    1 |    0 |    0 |    0 |    0 |    0 |    0 |    0
  3 |    1 |    0 |    0 |    0 |    0 |    0 |    0 |    0 |    0 |    0
  6 |    0 |    0 |    0 |    0 |    1 |    0 |    0 |    0 |    0 |    0
...

Note

Because a column-type of 0 was used when calling the freeze_tf2_model.py script, the PREDICT_TENSORFLOW function must be used to make predictions. If column-type was 1, meaning the model accepts complex input and output types, predictions must be made with the PREDICT_TENSORFLOW_SCALAR function.

To export the model with EXPORT_MODELS:

=> SELECT EXPORT_MODELS('/path/to/export/to', 'tf_mnist_keras');
 EXPORT_MODELS
---------------
 Success
(1 row)

Note

While you cannot continue training a TensorFlow model after you export it from the database, you can use it to predict on data in another database cluster, or outside the database on another platform.

TensorFlow 1 (deprecated)

Install TensorFlow 1.15 with Python 3.7 or below.
Run train_save_model.py in Machine-Learning-Examples/TensorFlow/tf1 to train and save the model in TensorFlow and frozen graph formats.

Note
OpenText™ Analytics Database does not supply a script to save and freeze TensorFlow 1 models that use complex column types.

Data-Analysis: tf_model_desc.json overview

Mon, 01 Jan 0001 00:00:00 +0000

Before importing your externally trained TensorFlow models, you must:

save the model in frozen graph (.pb) format
create tf_model_desc.json, which describes to your database how to map its inputs and outputs to input/output tables

Conveniently, the script freeze_tf2_model.py included in the TensorFlow directory of the Machine-Learning-Examples repository (and in opt/vertica/packages/TFIntegration/examples) will do both of these automatically. In most cases, the generated tf_model_desc.json can be used as-is, but for more complex datasets and use cases, you might need to edit it.

The contents of the tf_model_desc.json file depend on whether you provide a column-type of 0 or 1 when calling the freeze_tf2_model.py script. If column-type is 0, the imported model accepts primitive input and output columns. If it is 1, the model accepts complex input and output columns.

Models that accept primitive types

The following tf_model_desc.json is generated from the MNIST handwriting dataset used by the TensorFlow example.

{
    "frozen_graph": "mnist_keras.pb",
    "input_desc": [
        {
            "op_name": "image_input",
            "tensor_map": [
                {
                    "idx": 0,
                    "dim": [
                        1,
                        28,
                        28,
                        1
                    ],
                    "col_start": 0
                }
            ]
        }
    ],
    "output_desc": [
        {
            "op_name": "OUTPUT/Softmax",
            "tensor_map": [
                {
                    "idx": 0,
                    "dim": [
                        1,
                        10
                    ],
                    "col_start": 0
                }
            ]
        }
    ]
}

This file describes the structure of the model's inputs and outputs. It must contain a frozen_graph field that matches the filename of the .pb model, an input_desc field, and an output_desc field.

input_desc and output_desc: the descriptions of the input and output nodes in the TensorFlow graph. Each of these include the following fields:
- op_name: the name of the operation node which is set when creating and training the model. You can typically retrieve the names of these parameters from tfmodel.inputs and tfmodel.outputs. For example:
```
$ print({t.name:t for t in tfmodel.inputs})
{'image_input:0': <tf.Tensor 'image_input:0' shape=(?, 28, 28, 1) dtype=float32>}
```
```
$ print({t.name:t for t in tfmodel.outputs})
{'OUTPUT/Softmax:0': <tf.Tensor 'OUTPUT/Softmax:0' shape=(?, 10) dtype=float32>}
```
  In this case, the respective values for op_name would be the following.
  - input_desc: image_input
  - output_desc: OUTPUT/Softmax
  For a more detailed example of this process, review the code for freeze_tf2_model.py.
- tensor_map: how to map the tensor to database columns, which can be specified with the following:
  - idx: the index of the output tensor under the given operation (should be 0 for the first output, 1 for the second output, etc.).
  - dim: the vector holding the dimensions of the tensor; it provides the number of columns.
  - col_start (only used if col_idx is not specified): the starting column index. When used with dim, it specifies a range of indices of database columns starting at col_start and ending at col_start+flattend_tensor_dimension. The database starts at the column specified by the index col_start and gets the next flattened_tensor_dimension columns.
  - col_idx: the indices in the database columns corresponding to the flattened tensors. This allows you explicitly specify the indices of the database columns that couldn't otherwise be specified as a simple range with col_start and dim (e.g. 1, 3, 5, 7).
  - data_type (not shown): the data type of the input or output, one of the following:
    - TF_FLOAT (default)
    - TF_DOUBLE
    - TF_INT8
    - TF_INT16
    - TF_INT32
    - TF_INT64

Below is a more complex example that includes multiple inputs and outputs:

{
    "input_desc": [
        {
            "op_name": "input1",
            "tensor_map": [
                {
                    "idx": 0,
                    "dim": [
                        4
                    ],
                    "col_idx": [
                        0,
                        1,
                        2,
                        3
                    ]
                },
                {
                    "idx": 1,
                    "dim": [
                        2,
                        2
                    ],
                    "col_start": 4
                }
            ]
        },
        {
            "op_name": "input2",
            "tensor_map": [
                {
                    "idx": 0,
                    "dim": [],
                    "col_idx": [
                        8
                    ]
                },
                {
                    "idx": 1,
                    "dim": [
                        2
                    ],
                    "col_start": 9
                }
            ]
        }
    ],
    "output_desc": [
        {
            "op_name": "output",
            "tensor_map": [
                {
                    "idx": 0,
                    "dim": [
                        2
                    ],
                    "col_start": 0
                }
            ]
        }
    ]
}

Models that accept complex types

The following tf_model_desc.json is generated from a model that inputs and outputs complex type columns:

{
    "column_type": "complex",
    "frozen_graph": "frozen_graph.pb",
    "input_tensors": [
        {
            "name": "x:0",
            "data_type": "int32",
            "dims": [
                -1,
                1
            ]
        },
        {
            "name": "x_1:0",
            "data_type": "int32",
            "dims": [
                -1,
                2
            ]
        }
    ],
    "output_tensors": [
        {
            "name": "Identity:0",
            "data_type": "float32",
            "dims": [
                -1,
                1
            ]
        },
        {
            "name": "Identity_1:0",
            "data_type": "float32",
            "dims": [
                -1,
                2
            ]
        }
    ]
}

As with models that accept primitive types, this file describes the structure of the model's inputs and outputs and contains a frozen_graph field that matches the filename of the .pb model. However, instead of an input_desc field and an output_desc field, models with complex types have an input_tensors field and an output_tensors field, as well as a column_type field.

column_type: specifies that the model accepts input and output columns of complex types. When imported into the database, the model must make predictions using the PREDICT_TENSORFLOW_SCALAR function.
input_tensors and output_tensors: the descriptions of the input and output tensors in the TensorFlow graph. Each of these fields include the following sub-fields:
- name: the name of the tensor for which information is listed. The name is in the format of operation:tensor-number, where operation is the operation that contains the tensor and tensor-number is the index of the tensor under the given operation.
- data_type: the data type of the elements in the input or output tensor, one of the following:
  - TF_FLOAT (default)
  - TF_DOUBLE
  - TF_INT8
  - TF_INT16
  - TF_INT32
  - TF_INT64
- dims: the dimensions of the tensor. Each input/output tensor is contained in a 1D ARRAY in the input/output ROW column.

OpenText Analytics Database 26.2.x – TensorFlow models

Data-Analysis: TensorFlow integration and directory structure

Directory and file structure for TensorFlow models

tf_model_desc.json

Importing TensorFlow models

Make predictions with an imported TensorFlow model

Using PREDICT_TENSORFLOW

Using PREDICT_TENSORFLOW_SCALAR

Exporting TensorFlow models

See also

Data-Analysis: TensorFlow example

Prepare a TensorFlow model

Train and save a TensorFlow model

Import TensorFlow models and make predictions

Note

Note

TensorFlow 1 (deprecated)

Note

See also

Data-Analysis: tf_model_desc.json overview

Models that accept primitive types

Models that accept complex types

See also